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Degrees / year
BS(EE) / 1982, Nanjing Institute of Technology, China
PhD(CS) / 1989, Australian National University, Australia
Current Appointment
Associate
Professor
School of Information
Technologies
Faculty of
Engineering and Information Technology
The University
of Sydney
Australia
Units of Study Taught
Parallel and Distributed
Computing
Operating System Internals
Algorithms
Computer Architecture
Computer Networks
Parallel and Distributed Computing
Algorithm Design and Analysis
Grid and Cloud Computing
Bioinformatics
Research Grants (2007 onwards)
[1] A. Y. Zomaya
and B. B. Zhou, Replica Placement in Data-Intensive Distributed Computing
Systems, ARC Discovery Project, DP1097111, A$250,000, 2010-2013.
[2] B. B. Zhou
and R. P. Brent, An Integrative and Interactive Approach for Co-estimation of
Multiple Sequence Alignment and Phylogeny Reconstruction, ARC Discovery
Project, DP0985271, A$230,000, 2009-2011.
[3] A. Y. Zomaya
and B. B. Zhou, M. Charleston and A. Viglas, A Grid-enabled Meta-Server for
Protein Threading, ARC Discovery Project, DP0067266, A$366,000, 2006-2008.
[4] B. B. Zhou, J. Dongarra
and R. P. Brent, Grid Computing for Phylogenetic Analysis, ARC Discovery
Project, DP0557909, A$259,000, 2005-2007.
Peer-Reviewed Research Publications (2007
onwards)
(Dr Zhou has published over 100 articles
and below is his publications from 2007 onwards.)
Scholarly
Book Chapters
[1] B. A. Alqaralleh, C. Wang, B. B. Zhou,
and A. Y. Zomaya, A Flexible Data Store for Managing Bioinformatics Data, in
Algorithms in Computational Molecular Biology: Techniques, Approaches and
Applications, edited by M. Elloumi and A. Y.
Zomaya, John Wiley & Sons, Inc., 2011, pp. 221-240 (Chapter 11).
[2] P. D. Yoo, B. B. Zhou, and A. Y. Zomaya, Protein Domain Boundary
Prediction, in Algorithms in Computational Molecular Biology, edited by M. Elloumi and A.Y. Zomaya, John Wiley & Sons, Inc.,
2011, pp. 501–519 (Chapter 23).
[3] C. Wang, A. Y. Zomaya, and B. B. Zhou, Data Syndication
Techniques for Bioinformatics Applications, in Grid Computing for
Bioinformatics and Computational Biology, John Wiley & Sons, Inc., 2008,
pp. 157-178 (Chapter 7).
Referred Journal
Articles
[4] Y. C. Lee, C. Wang, A. Y. Zomaya, and B. B. Zhou, Profit-driven
scheduling for cloud services with data access awareness, Journal of Parallel
Distributed Computing (in press, acceptance date: 11/12/2011).
[5] P. Yang, J. Ma, P. Wang, Y. Zhu, B. B. Zhou, and Y. H.Yang, Improving X!Tandem on
peptide identification from mass spectrometry by self-boosted Percolator,
IEEE/ACM Transactions on Computational Biology and Bioinformatics (in press,
acceptance date: 17/10/2011).
[6] P. Yang, J. W.K. Ho, Y. H. Yang, and B. B. Zhou, Gene-gene
interaction filtering with ensemble of filters, BMC Bioinformatics, 12:S10,
2011.
[7] P. Yang, Y. H. Yang, B. B. Zhou, and A. Y. Zomaya, A review of
ensemble methods in bioinformatics, Current Bioinformatics, vol. 5, pp.
296-308, 2010.
[8] P. Yang, J. W.K. Ho, A. Y. Zomaya, and B. B. Zhou, A genetic ensemble approach for gene-gene interaction
identification, BMC Bioinformatics, 2010, 11:524.
[9] C. Wang, B. B. Zhou, and A. Y. Zomaya, EvolvingSpace:
a Data Centric Framework for Integrating Bioinformatics Applications, IEEE
Transactions on Computers, Vol. 59, No. 6, 2010, pp. 721-734.
[10] P. Yang, Z. Zhang, B. B. Zhou, and A. Y. Zomaya, A clustering
based hybrid system for biomarker selection and sample classification of mass
spectrometry data, Neurocomputing, 73:2317-2331,
2010.
[11] P. Yang, B. B. Zhou, Z. Zhang, and A. Y. Zomaya, A multi-filter
enhanced genetic ensemble system for gene selection and sample classification
of microarray data, BMC Bioinformatics, 11:S5, 2010
[12] P. Wang, B. B. Zhou, C. Wang, and A. Y. Zomaya, A Novel
Integrative Phylogenetic Analysis System, International Journal of
Computational Biology and Drug Design, Vol. 3, No. 1, 2010, pp. 1–14.
[13] C. Wang, B. B. Zhou, and A. Y. Zomaya, A Decentralized Method
for Scaling up Genome Similarity Search Service, IEEE Transactions on
Parallel and Distributed Systems, Vol. 20, No. 3, 2009, pp. 303–315.
[14] P. Yang, L. Xu, B. B. Zhou, Z. Zhang, and A. Y. Zomaya, A
particle swarm based hybrid system for imbalanced medical data sampling, BMC
Genomics, 10:S34, 2009
[15] P. D. Yoo, B. B. Zhou, and A. Y. Zomaya, A modular kernel
approach for integrative analysis of protein inter-domain linker regions. BMC
Genomics, 10(3):S21, 2009.
[16] P. D. Yoo, J. Taheri, B. B. Zhou, and A. Y. Zomaya, DomNet: Protein Domain Boundary Prediction Using Enhanced
General Regression Network and New Profiles, IEEE Transactions on NanoBioscience, Vol. 7, No. 2, 2008, pp. 172–181.
[17] P. D. Yoo, Y. S. Ho,
B. B. Zhou, and A. Y. Zomaya, SiteSeek:
Post–Translational Modification Analysis Using Adaptive
Locality–Effective Kernel Methods and New Profiles, BMC Bioinformatics,
Vol. 9, 2008, pp. 272–288.
[18] P. D. Yoo, B. B.
Zhou, and A. Y. Zomaya, Machine Learning Techniques for Protein
Secondary Structure Prediction: An Overview and Evaluation, Current
Bioinformatics, Vol. 3, No. 2, 2008, pp. 74–86.
[19] P. D Yoo, A. R. Sikder, B. B. Zhou and
A. Y. Zomaya, Improved General Regression Network for Protein Domain Boundary
Prediction, BMC Bioinformatics, 9 (Suppl 1):S12,
2008.
[20] Y. Zhang, M. Chen, B. B. Zhou, L. S. Jermiin and A. W. D. Larkum, Evolution of the Inner Light-Harvesting Antenna
Protein Family of Cyanobacteria, Algae and Pplants,
Journal of Molecular Evolution, 64(3), 2007, pp. 321-331.
Refereed
Conference Papers
[21] A. V. Do, J. Chen, C. Wang, Y. C. Lee, A. Y. Zomaya, and B. B.
Zhou, Profiling Applications for Virtual Machine Placement in Clouds,
Proceedings of 2011 IEEE International Conference on Cloud Computing (CLOUD),
Washington DC, 2011.
[22] W. N. S. W. Nik, B. B. Zhou, A. Y.
Zomaya, and J. H. Abawajy, Efficient Resource
Selection Algorithm for Enterprise Grid Systems, Proceedings of IEEE 9th
International Symposium on Parallel and Distributed Processing with
Applications (ISPA), 2011.
[23] J. Chen, C. Wang, B. B. Zhou, L. Sun, Y. C. Lee, and A. Y.
Zomaya, Tradeoffs between Profit and Customer
Satisfaction for Service Provisioning in the Cloud, Proceedings of the 20th
International ACM Symposium on High-Performance Parallel and Distributed
Computing (HPDC), 2011.
[24] P. Yang, Z. Zhang, B. B. Zhou, and A. Y. Zomaya, Sample subsets
optimization for classifying imbalanced biological data, Proceedings of the
15th Pacific-Asia Conference on Knowledge Discovery and Data Mining (PAKDD),
2011.
[25] G. Chen, H. Jin, D. Zou, B. B. Zhou, W. Qiang, and G. Hu, SHelp: Automatic Self-healing for Multiple Application
Instances in a Virtual Machine Environment, Proceedings of 2010 IEEE
International Conference on Cluster Computing, Heraklion,
Greece, Sept 2010, pp.97-106.
[26] Y. C. Lee, C. Wang, A. Y. Zomaya, and B. B. Zhou, Profit-driven
Service Request Scheduling in Clouds, Proceedings of the 10th IEEE/ACM
International Symposium on Cluster, Cloud and Grid Computing (CCGrid 2010), Melbourne, Australia, 2010. (the Best Paper
Award)
[27] Y. C. Lee, C. Wang, J. Taheri, A. Y. Zomaya and B. B. Zhou, On
the Effect of Using Third–Party Clouds for Maximizing Profit,
Proceedings of the 10th International Conference on Algorithms and
Architectures for Parallel Processing, Lecture Notes in Computer Science
6081, Springer, Ching-Hsien, H., Yang, L.T., Park,
J.H. and Yeo, S.-S. (eds.), May
21–23, pp. 381–390, Busan, Korea, 2010.
[28] P. Yoo, Y. S. Ho, B. B. Zhou and A. Y. Zomaya, Adaptive
Locality-Effective Kernel Methods for Phosphorylation Site Prediction,
Proceedings of the 5th International Workshop on High Performance
Computational Biology, Miami, April 2008.
[29] P. Wang, B. B. Zhou, and A. Y.Zomaya,
An Integrative Approach to Phylogenetic Inference, Proceeding of International Conference on
Bioinformatics and Computational Biology, Las Vegas, USA, 2008.
[30] P. Wang, B. B. Zhou, and A. Y. Zomaya, A Near Minimum Evolution
Maximum Likelihood Phylogenetic Reconstruction Method, Proceedings of the
2008 International Conference on Bioinformatics and Computational Biology,
Las Vegas, USA, 2008.
[31] B. A. Alqaralleh, C. Wang, A. Almazari, B. B. Zhou, and A. Y. Zomaya, The Effects of
Replica Propagation Speed Performance of Structured Overlay Networks,
Proceedings of PDPTA’08 Conference. Las Vegas, USA, 2008.
[32] J. Taheri, A. Y. Zomaya, and B. B. Zhou, RBT-I: A Novel Approach
for Solving the Multiple Sequence Alignment Problem, Proceeding of the
IEEE/ACS International Conference on Computer Systems and Applications
(AICCSA-08), Doha, Qatar, April 2008.
[33] B. A. Alqaralleh, C. Wang, B. B. Zhou
and A. Y. Zomaya, A Proactive Method for Content Distribution in a Data
Indexed DHT Overlay, Proceeding of 2007 International Conference on High
Performance Computing and Communications, Houston, September 2007.
[34] C. Wang, B. B. Zhou and A. Y. Zomaya, Scaling up Genome
Similarity Search Services through Content Distribution, Proceedings of the
2007 International Conference on Parallel Processing, Xi'an, China, September
2007.
[35] C. Wang, B. B. Zhou, F. Brites, B.
Liu, and A. Y. Zomaya, Distributing Genome Sequence Databases with a
Publish/Subscribe Middleware, Proceedings Of IEEE International Conference on
Self-Adaptive and Self-Organizing Systems (SASO 2007), 273-276, MIT,
Cambridge, MA, USA, 2007.
[36] P. D. Yoo, B. B. Zhou and A. Y. Zomaya, Machine Learning
Techniques for Protein Secondary Structure Prediction, Proceedings of the
2007 International Conference on Bioinformatics & Computational Biology,
Monte Carlo Resort, Las Vegas, Nevada, June 2007.
[37] M. Tarawneh, B. B. Zhou, P. Wang and A. Y. Zomaya, Investigation
of relationships among excavate taxa using a new quartet-based phylogenetic
analysis method, Proceedings of the IEEE International Symposium on
Bioinformatics and Life Science Computing, Niagara Fall, Canada, May 2007.
[38] B. A. Alqaralleh, C. Wang, B. B. Zhou,
and A. Y. Zomaya, A Proactive Method for Content Distribution in a Data
Indexed DHT Overlay, Proceedings of the 3rd International Conference on High
Performance Computing and Communications (HPCC 2007), Lecture Notes in
Computer Science 4782 Springer, Perrott, R.H.,
Chapman, B.M., Subhlok, J., de Mello, R.F., Yang,
L.T. (eds.), 599–610, September 26–38, Houston, USA.
[39] B. A. Alqaralleh, C. Wang, B. B. Zhou
and A. Zomaya, Effects of Replica Placement Algorithms on Performance of
structured Overlay Networks, Proceedings of the 4th International Workshop on
Hot Topics in Peer-to-Peer Systems In conjunction with 21st IEEE
International Parallel & Distributed Processing Symposium, Long Beach,
California, March 2007.
[40] P. Wang, B. B.
Zhou, M. Tarawneh, D. Chu, A. Y. Zomaya and R. P. Brent, A Global maximum likelihood
super-quartet phylogeny method, Proceedings of The 5th Asia-Pacific
Bioinformatics Conference (APBC2007), Hong Kong, Jan. 2007.
Other Professional and
Public Outreach Activities
Dr Bing Bing Zhou has been a member of the technical program
committees of several international conferences and acted as a reviewer for
many international journals, including IEEE Trans on Computers, IEEE Trans on
Parallel and Distributed Computing and Journal of Parallel and Distributed
Computing.
Last updated on March 28, 2012
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